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Anti-Cocaine Antibody 7.5.21, Crystal Form III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A1W 2A1W, constant and variable domains used separately
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 16% PEG8000, 0.3M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.979 α = 90 b = 216.355 β = 90 c = 58.32 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 315 2004-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.89996 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 97.8 0.059 26.7 6.9 101629 101629 47.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 91.6 91.6 1.8 6.4 9380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2A1W, constant and variable domains used separately 2.2 129.1 101532 101532 5097 97.77 0.225 0.222 0.2205 0.279 0.2774 RANDOM 48.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.47 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.71 r_dihedral_angle_4_deg 19.555 r_dihedral_angle_3_deg 16.69 r_dihedral_angle_1_deg 6.749 r_scangle_it 1.93 r_angle_refined_deg 1.342 r_scbond_it 1.28 r_mcangle_it 0.935 r_mcbond_it 0.544 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.71 r_dihedral_angle_4_deg 19.555 r_dihedral_angle_3_deg 16.69 r_dihedral_angle_1_deg 6.749 r_scangle_it 1.93 r_angle_refined_deg 1.342 r_scbond_it 1.28 r_mcangle_it 0.935 r_mcbond_it 0.544 r_nbtor_refined 0.303 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.141 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.095 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13384 Nucleic Acid Atoms Solvent Atoms 531 Heterogen Atoms 159
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing