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Crystal structure of aromatic amine dehydrogenase (AADH) from Alcaligenes faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, ammonium sulphate, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.4 47.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.777 α = 90 b = 89.136 β = 90.23 c = 80.324 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 15 95 0.058 12.5 2.9 288444 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.25 91 0.451 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.2 12 288444 15336 100 0.143 0.143 0.142 0.1528 0.17 0.1809 RANDOM 14.221
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 -1.58 -0.68 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.822 r_sphericity_free 15.365 r_dihedral_angle_4_deg 11.016 r_dihedral_angle_3_deg 10.955 r_dihedral_angle_1_deg 7.204 r_sphericity_bonded 7.057 r_scangle_it 3.712 r_scbond_it 2.928 r_mcangle_it 1.965 r_mcbond_it 1.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.822 r_sphericity_free 15.365 r_dihedral_angle_4_deg 11.016 r_dihedral_angle_3_deg 10.955 r_dihedral_angle_1_deg 7.204 r_sphericity_bonded 7.057 r_scangle_it 3.712 r_scbond_it 2.928 r_mcangle_it 1.965 r_mcbond_it 1.631 r_angle_refined_deg 1.543 r_rigid_bond_restr 1.346 r_mcbond_other 0.954 r_angle_other_deg 0.945 r_symmetry_vdw_other 0.281 r_symmetry_vdw_refined 0.236 r_nbd_other 0.207 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.102 r_nbtor_other 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7258 Nucleic Acid Atoms Solvent Atoms 1744 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling SOLVE phasing