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Crystal structure of the phenylhydrazine adduct of aromatic amine dehydrogenase from Alcaligenes faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 PEG 2000 MME, ammonium sulphate, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.4 46.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.692 α = 90 b = 88.667 β = 90.24 c = 80.522 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 RADII TOROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 97 0.062 16.3 3.2 187796 -3 13.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 97 0.321 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 15 187422 9440 96.23 0.172 0.172 0.17 0.1722 0.196 0.1964 RANDOM 14.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 -0.97 0.31 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.288 r_dihedral_angle_4_deg 12.521 r_dihedral_angle_3_deg 11.221 r_dihedral_angle_1_deg 7.042 r_scangle_it 4.494 r_scbond_it 3.704 r_mcangle_it 2.311 r_mcbond_it 2.06 r_angle_refined_deg 1.469 r_angle_other_deg 0.832
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.288 r_dihedral_angle_4_deg 12.521 r_dihedral_angle_3_deg 11.221 r_dihedral_angle_1_deg 7.042 r_scangle_it 4.494 r_scbond_it 3.704 r_mcangle_it 2.311 r_mcbond_it 2.06 r_angle_refined_deg 1.469 r_angle_other_deg 0.832 r_mcbond_other 0.574 r_xyhbond_nbd_other 0.24 r_symmetry_vdw_other 0.229 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.204 r_nbd_other 0.199 r_xyhbond_nbd_refined 0.127 r_symmetry_hbond_refined 0.116 r_nbtor_other 0.098 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7374 Nucleic Acid Atoms Solvent Atoms 1074 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling