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Crystal structure of Benzaldehyde lyase (BAL)- SeMet
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 PEG 200, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.165 α = 90 b = 150.165 β = 90 c = 195.607 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-03-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9793, 0.9801, 0.9393 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 35 99.5 0.095 0.082 12.5 4 157089 156247 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.7 99.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.58 24.82 2.5 82005 76469 4037 100 0.214 0.21328 0.2116 0.2156 0.24496 0.2127 RANDOM 31.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.53 0.77 1.53 -2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.318 r_dihedral_angle_4_deg 22.326 r_dihedral_angle_3_deg 18.01 r_dihedral_angle_1_deg 6.238 r_scangle_it 1.623 r_angle_refined_deg 1.515 r_scbond_it 1.419 r_symmetry_vdw_refined 0.472 r_mcangle_it 0.462 r_mcbond_it 0.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.318 r_dihedral_angle_4_deg 22.326 r_dihedral_angle_3_deg 18.01 r_dihedral_angle_1_deg 6.238 r_scangle_it 1.623 r_angle_refined_deg 1.515 r_scbond_it 1.419 r_symmetry_vdw_refined 0.472 r_mcangle_it 0.462 r_mcbond_it 0.401 r_symmetry_hbond_refined 0.33 r_nbtor_refined 0.312 r_metal_ion_refined 0.299 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16296 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing