2AF2

Solution structure of disulfide reduced and copper depleted Human Superoxide Dismutase


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.5mM 15N protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
2HNHA1.5mM 15N protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
33D_15N-separated_NOESY1mM 15N;13C protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
43D_13C-separated_NOESY1mM 15N;13C protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
5H(C)CH_TOCSY1mM 15N;13C protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
6(H)CCH_TOCSY1mM 15N;13C protein sample20mM sodium phosphate, 20mM DTT buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
7TROSY-HNCACB1mM 15N;13C;2H protein sample. The triple labeled dimeric SOD contained about 70% 2H20mM sodium phosphate, 20mM DTT, buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
8TROSY-HNCA1mM 15N;13C;2H protein sample. The triple labeled dimeric SOD contained about 70% 2H20mM sodium phosphate, 20mM DTT, buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
9TROSY_HN(CO)CA1mM 15N;13C;2H protein sample. The triple labeled dimeric SOD contained about 70% 2H20mM sodium phosphate, 20mM DTT, buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
10TROSY_HNCO1mM 15N;13C;2H protein sample. The triple labeled dimeric SOD contained about 70% 2H20mM sodium phosphate, 20mM DTT, buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
11TROSY_HN(CA)CO1mM 15N;13C;2H protein sample. The triple labeled dimeric SOD contained about 70% 2H20mM sodium phosphate, 20mM DTT, buffer, pH 5, 90% H2O, 10% D2O20mM sodium phosphate51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE700
3BrukerAVANCE800
4BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, sumulated annealing, restrained energy minimizationXwinNMR
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number600
Conformers Submitted Total Number30
Representative Model1 (fewest violations)
Additional NMR Experimental Information
DetailsThe reduction of disulfide bridge was accomplished by addition of dithiothreitol (DTT)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMRBruker
2data analysisNEASY
3structure solutionCYANA1.03Herrmann, T., Guntert, P., and Wuthrich, K
4refinementAmber8Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., Ferguson, D. M., Seibel, G. L., Singh, U. C., Weiner, P. K., and Kollman, P. A