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Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 PEG400, sodium citrate, Tris pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.52 51.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.247 α = 90 b = 129.247 β = 90 c = 180.143 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirror 2005-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 40.8 99.5 0.09 10.3 7.4 97893 97376
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 96.2 0.565 3 6.3 9362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.01 40.8 87572 87572 9765 99.63 0.19164 0.19164 0.18772 0.1867 0.2263 0.2253 RANDOM 35.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.76 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.895 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 16.283 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.265 r_scbond_it 2.335 r_mcangle_it 1.416 r_angle_refined_deg 1.241 r_mcbond_it 0.871 r_symmetry_vdw_refined 0.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.895 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 16.283 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.265 r_scbond_it 2.335 r_mcangle_it 1.416 r_angle_refined_deg 1.241 r_mcbond_it 0.871 r_symmetry_vdw_refined 0.252 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.158 r_metal_ion_refined 0.127 r_chiral_restr 0.105 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8105 Nucleic Acid Atoms Solvent Atoms 946 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection SCALEPACK data scaling SHELX phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing