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Crystal Structure of Acetyltransferase of GNAT family from Enterococcus faecalis V583
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 ETHANOL, HEPES, Magnesium Chloride, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3 59.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.618 α = 90 b = 64.618 β = 90 c = 176.396 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97910 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 58.82 96.9 0.081 12.7 9.8 42070 40808
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.28 90.3 0.613 1.8 5.3 3778
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.19 58.82 36679 36679 4076 96.77 0.2152 0.2152 0.21008 0.2133 0.25929 0.2612 RANDOM 56.023
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.684 r_dihedral_angle_3_deg 18.617 r_dihedral_angle_4_deg 18.375 r_dihedral_angle_1_deg 5.767 r_scangle_it 3.021 r_scbond_it 2.183 r_mcangle_it 1.53 r_angle_refined_deg 1.323 r_mcbond_it 0.856 r_symmetry_vdw_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.684 r_dihedral_angle_3_deg 18.617 r_dihedral_angle_4_deg 18.375 r_dihedral_angle_1_deg 5.767 r_scangle_it 3.021 r_scbond_it 2.183 r_mcangle_it 1.53 r_angle_refined_deg 1.323 r_mcbond_it 0.856 r_symmetry_vdw_refined 0.306 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4678 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection SCALEPACK data scaling SHELX phasing