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Structure of human Mnk2 Kinase Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 salt, pH 7, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.2 61.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.502 α = 90 b = 104.502 β = 90 c = 72.351 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 60 99.5 31167 31011 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 15 3.4 25537 24664 1295 96.58 0.2544 0.21714 0.21526 0.2488 0.25444 0.2387 RANDOM 75.769
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.83 -0.92 -1.83 2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.648 r_dihedral_angle_3_deg 16.51 r_dihedral_angle_4_deg 15.152 r_scangle_it 6.4 r_dihedral_angle_1_deg 5.773 r_mcangle_it 5.63 r_scbond_it 4.677 r_mcbond_it 4.357 r_angle_refined_deg 1.207 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.648 r_dihedral_angle_3_deg 16.51 r_dihedral_angle_4_deg 15.152 r_scangle_it 6.4 r_dihedral_angle_1_deg 5.773 r_mcangle_it 5.63 r_scbond_it 4.677 r_mcbond_it 4.357 r_angle_refined_deg 1.207 r_nbtor_refined 0.304 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.199 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2215 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing