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Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 PEG400, calcium chloride, sodium acetate , pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.968 α = 90 b = 88.154 β = 90 c = 117.552 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9766, 0.9795, 0.95 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 97.3 0.095 19.5 9.2 25329 2 2 30.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 86.7 0.167 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 14.7 26003 24445 1239 94.01 0.215 0.278 0.213 0.2241 0.254 0.27 RANDOM 20.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.12 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.321 r_dihedral_angle_1_deg 3.561 r_scangle_it 2.554 r_mcangle_it 2.242 r_scbond_it 1.689 r_mcbond_it 1.38 r_angle_refined_deg 1.308 r_angle_other_deg 0.818 r_symmetry_vdw_refined 0.446 r_nbd_refined 0.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.321 r_dihedral_angle_1_deg 3.561 r_scangle_it 2.554 r_mcangle_it 2.242 r_scbond_it 1.689 r_mcbond_it 1.38 r_angle_refined_deg 1.308 r_angle_other_deg 0.818 r_symmetry_vdw_refined 0.446 r_nbd_refined 0.276 r_xyhbond_nbd_refined 0.236 r_nbd_other 0.22 r_symmetry_vdw_other 0.207 r_symmetry_hbond_refined 0.179 r_metal_ion_refined 0.152 r_xyhbond_nbd_other 0.127 r_nbtor_other 0.091 r_chiral_restr 0.076 r_bond_refined_d 0.017 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2268 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling SOLVE phasing