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Auracyanin A: A "blue" copper protein from the green thermophilic photosynthetic bacterium,chloroflexus aurantiacus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other auracyanin B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 277 Lithium sulfate, sodium citrate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2 38.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.578 α = 90 b = 70.578 β = 90 c = 45.665 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 0.96868 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 95.6 0.086 10.8 9667 9667 2 2 15.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.898 99.3 0.32 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT auracyanin B 1.85 18 9667 9202 465 93.85 0.16436 0.16436 0.16217 0.1705 0.20703 0.2106 RANDOM 16.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.49 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.716 r_dihedral_angle_3_deg 10.959 r_dihedral_angle_4_deg 8.031 r_scangle_it 7.487 r_dihedral_angle_1_deg 7.017 r_scbond_it 5.124 r_mcangle_it 4.502 r_mcbond_it 4.393 r_angle_refined_deg 1.586 r_mcbond_other 1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.716 r_dihedral_angle_3_deg 10.959 r_dihedral_angle_4_deg 8.031 r_scangle_it 7.487 r_dihedral_angle_1_deg 7.017 r_scbond_it 5.124 r_mcangle_it 4.502 r_mcbond_it 4.393 r_angle_refined_deg 1.586 r_mcbond_other 1.38 r_angle_other_deg 0.792 r_symmetry_hbond_refined 0.2 r_nbd_refined 0.197 r_nbtor_refined 0.179 r_nbd_other 0.168 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.14 r_symmetry_vdw_other 0.104 r_chiral_restr 0.1 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 901 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing