☰ Navigation Tabs
Crystal structure of Escherichia coli putative N-ACETYLMANNOSAMINE KINASE, New York Structural Genomics Consortium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 290 30% PEG 1500, pH 7.20, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.1 40.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.991 α = 90 b = 75.841 β = 90 c = 166.646 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 87 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2005-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 97 0.057 0.046 12.8 13.6 26544 26544 12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 87.3 0.231 0.253 3.9 6.2 2367
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.2 20 25610 25608 846 97.14 0.22 0.18044 0.17852 0.1807 0.24298 0.2408 RANDOM 35.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.05 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.794 r_dihedral_angle_3_deg 14.378 r_dihedral_angle_4_deg 11.364 r_scangle_it 5.891 r_dihedral_angle_1_deg 5.035 r_mcangle_it 4.536 r_scbond_it 4.05 r_mcbond_it 3.249 r_angle_refined_deg 1.026 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.794 r_dihedral_angle_3_deg 14.378 r_dihedral_angle_4_deg 11.364 r_scangle_it 5.891 r_dihedral_angle_1_deg 5.035 r_mcangle_it 4.536 r_scbond_it 4.05 r_mcbond_it 3.249 r_angle_refined_deg 1.026 r_nbtor_refined 0.292 r_symmetry_hbond_refined 0.235 r_xyhbond_nbd_refined 0.169 r_nbd_refined 0.161 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4151 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing REFMAC refinement