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RR02-Rec Phosphate in the active site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NXW PDB ENTRY 1NXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 298 40% PEG300, Phosphate/citrate buffer, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.673 α = 90 b = 92.829 β = 90 c = 36.789 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 46.4 6052 5980
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NXW 2.342 46.4 5400 579 98.92 0.202 0.20222 0.1976 0.2125 0.24617 0.2539 RANDOM 38.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.61 -1.29 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.88 r_scangle_it 5.246 r_scbond_it 2.919 r_mcangle_it 1.921 r_angle_refined_deg 1.875 r_mcbond_it 1.005 r_angle_other_deg 0.936 r_symmetry_vdw_other 0.279 r_nbd_other 0.244 r_nbd_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.88 r_scangle_it 5.246 r_scbond_it 2.919 r_mcangle_it 1.921 r_angle_refined_deg 1.875 r_mcbond_it 1.005 r_angle_other_deg 0.936 r_symmetry_vdw_other 0.279 r_nbd_other 0.244 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.213 r_xyhbond_nbd_refined 0.193 r_symmetry_hbond_refined 0.184 r_chiral_restr 0.105 r_nbtor_other 0.097 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 938 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling EPMR phasing