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Crystal structure of recombinant chicken sulfite oxidase with Arg at residue 161
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SOX PDB Entry 1SOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG 8000, MES, Magnesium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.37 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.137 α = 90 b = 123.102 β = 94.31 c = 55.129 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.250 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 95.1 0.071 2.1 77687
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 73.3 0.386 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1SOX 1.701 30 77657 3913 95.1 0.157 0.157 0.155 0.1644 0.187 0.1944 RANDOM 20.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.14 0.88 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.476 r_dihedral_angle_4_deg 16.344 r_dihedral_angle_3_deg 11.615 r_dihedral_angle_1_deg 4.385 r_angle_refined_deg 1.571 r_mcangle_it 1.36 r_angle_other_deg 1.335 r_scangle_it 1.327 r_mcbond_it 1.192 r_scbond_it 0.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.476 r_dihedral_angle_4_deg 16.344 r_dihedral_angle_3_deg 11.615 r_dihedral_angle_1_deg 4.385 r_angle_refined_deg 1.571 r_mcangle_it 1.36 r_angle_other_deg 1.335 r_scangle_it 1.327 r_mcbond_it 1.192 r_scbond_it 0.895 r_symmetry_vdw_other 0.265 r_symmetry_hbond_refined 0.244 r_mcbond_other 0.211 r_nbd_refined 0.2 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.191 r_symmetry_vdw_refined 0.19 r_nbtor_refined 0.179 r_xyhbond_nbd_other 0.098 r_chiral_restr 0.097 r_nbtor_other 0.088 r_metal_ion_refined 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5639 Nucleic Acid Atoms Solvent Atoms 824 Heterogen Atoms 70
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction MOLREP phasing REFMAC refinement HKL-2000 data scaling