☰ Navigation Tabs
Crystal structure of R138Q mutant of recombinant sulfite oxidase at resting state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A99 PDB ENTRY 2A99
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG 4000, magnesium chloride, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.52 64.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.109 α = 90 b = 86.109 β = 90 c = 153.825 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.100 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 100 0.089 19275
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 100 0.599
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 2A99 2.503 30 19258 947 99.84 0.158 0.158 0.156 0.1556 0.202 0.2025 Copied from R-free of reflections of wild type crystals (PDB Entry 2A99) 42.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.7 1.7 -3.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.28 r_dihedral_angle_4_deg 18.154 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 3.717 r_scangle_it 2.93 r_scbond_it 1.692 r_angle_refined_deg 1.488 r_mcangle_it 1.31 r_mcbond_it 0.724 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.28 r_dihedral_angle_4_deg 18.154 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 3.717 r_scangle_it 2.93 r_scbond_it 1.692 r_angle_refined_deg 1.488 r_mcangle_it 1.31 r_mcbond_it 0.724 r_nbtor_refined 0.328 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.218 r_symmetry_hbond_refined 0.204 r_metal_ion_refined 0.198 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2869 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 26
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction REFMAC refinement HKL-2000 data scaling