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Crystal structure of recombinant chicken sulfite oxidase at resting state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SOX PDB entry 1SOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG 4000, Magnesium chloride, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.5 64.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.004 α = 90 b = 86.004 β = 90 c = 154.18 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.100 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 99.1 0.083 4 28243 27999
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 99.7 0.599 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1SOX 2.202 30 28243 27994 1424 99.11 0.15 0.15 0.149 0.1607 0.182 0.1928 RANDOM 45.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.19 2.19 -4.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.605 r_dihedral_angle_4_deg 17.907 r_dihedral_angle_3_deg 13.932 r_dihedral_angle_1_deg 4.104 r_scangle_it 2.953 r_scbond_it 1.959 r_angle_refined_deg 1.593 r_mcangle_it 1.256 r_angle_other_deg 1.245 r_mcbond_it 1.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.605 r_dihedral_angle_4_deg 17.907 r_dihedral_angle_3_deg 13.932 r_dihedral_angle_1_deg 4.104 r_scangle_it 2.953 r_scbond_it 1.959 r_angle_refined_deg 1.593 r_mcangle_it 1.256 r_angle_other_deg 1.245 r_mcbond_it 1.056 r_symmetry_vdw_other 0.289 r_symmetry_hbond_refined 0.256 r_nbd_other 0.233 r_xyhbond_nbd_refined 0.209 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.2 r_nbtor_refined 0.185 r_mcbond_other 0.167 r_metal_ion_refined 0.102 r_nbtor_other 0.099 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2871 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 32
Software Software Software Name Purpose HKL-2000 data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling