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carboxymethylproline synthase (CarB) from pectobacterium carotovora, apo enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 400, MgCl2, HEPES.Na, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.1 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.207 α = 90 b = 89.86 β = 90 c = 264.582 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2004-07-07 M SINGLE WAVELENGTH 2 1 x-ray CCD MARMOSAIC 225 mm CCD mirrors 2004-09-24 M MAD 3 1 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.978 SRS PX14.2 2 SYNCHROTRON SRS BEAMLINE PX10.1 0.9801, 0.98033, 0.976071 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 52.93 99.8 0.088 0.088 5.7 4.3 100581 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.24 2.36 99.6 99.6 0.35 0.35 3.4 3.1 14507
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.24 45.596 100449 5084 99.673 0.188 0.188 0.1849 0.1951 0.2385 0.2458 random 31.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.784 -0.779 -0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.924 r_dihedral_angle_4_deg 22.293 r_dihedral_angle_3_deg 16.908 r_dihedral_angle_1_deg 5.936 r_scangle_it 2.497 r_scbond_it 1.644 r_angle_refined_deg 1.484 r_scangle_other 0.997 r_angle_other_deg 0.88 r_mcangle_it 0.859
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.924 r_dihedral_angle_4_deg 22.293 r_dihedral_angle_3_deg 16.908 r_dihedral_angle_1_deg 5.936 r_scangle_it 2.497 r_scbond_it 1.644 r_angle_refined_deg 1.484 r_scangle_other 0.997 r_angle_other_deg 0.88 r_mcangle_it 0.859 r_scbond_other 0.658 r_mcbond_it 0.593 r_mcangle_other 0.405 r_symmetry_vdw_other 0.283 r_symmetry_hbond_refined 0.25 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.205 r_mcbond_other 0.204 r_nbd_other 0.195 r_symmetry_vdw_refined 0.185 r_nbtor_refined 0.183 r_xyhbond_nbd_other 0.151 r_nbtor_other 0.096 r_chiral_restr 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15898 Nucleic Acid Atoms Solvent Atoms 806 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling SHELX phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction HKL-2000 data reduction CCP4 data scaling SCALEPACK data scaling SHELXD phasing