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Anti-Cocaine Antibody 7.5.21, Crystal Form II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A1W PDB ENTRY 2A1W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 16% PEG8000, 0.3M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 54.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.41 α = 90 b = 81.857 β = 112.09 c = 61.608 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 4 2004-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.89996 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97 0.044 33 4 46600 46600 33.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 87.2 87.2 1.7 3.4 4182
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2A1W 1.8 33.3 46597 46597 2356 97.03 0.22 0.218 0.216 0.263 0.2623 RANDOM 40.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.02 1.94 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.945 r_dihedral_angle_4_deg 19.853 r_dihedral_angle_3_deg 18.126 r_dihedral_angle_1_deg 7.353 r_scangle_it 3.91 r_scbond_it 2.815 r_angle_refined_deg 2.04 r_mcangle_it 1.906 r_mcbond_it 1.268 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.945 r_dihedral_angle_4_deg 19.853 r_dihedral_angle_3_deg 18.126 r_dihedral_angle_1_deg 7.353 r_scangle_it 3.91 r_scbond_it 2.815 r_angle_refined_deg 2.04 r_mcangle_it 1.906 r_mcbond_it 1.268 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.22 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.144 r_bond_refined_d 0.022 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3328 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing