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CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR (NE_1354) FROM NITROSOMONAS EUROPAEA AT 1.90 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.2 273 40.0 % MPD, 0.1M Phosphate Citrate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K, pH 4.2
Crystal Properties Matthews coefficient Solvent content 2.3 46.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.862 α = 90 b = 40.788 β = 119.83 c = 53.393 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-06-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97929, 0.91162 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 26.48 97.7 0.095 0.095 3.7 3.7 14998
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 84.5 0.516 0.516 1.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 20 12269 672 98.61 0.185 0.182 0.2089 0.241 0.254 RANDOM 28.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 0.83 2.85 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.379 r_dihedral_angle_4_deg 12.684 r_dihedral_angle_3_deg 12.335 r_scangle_it 7.442 r_scbond_it 5.452 r_dihedral_angle_1_deg 5.035 r_mcangle_it 2.861 r_mcbond_it 2.347 r_angle_refined_deg 1.357 r_angle_other_deg 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.379 r_dihedral_angle_4_deg 12.684 r_dihedral_angle_3_deg 12.335 r_scangle_it 7.442 r_scbond_it 5.452 r_dihedral_angle_1_deg 5.035 r_mcangle_it 2.861 r_mcbond_it 2.347 r_angle_refined_deg 1.357 r_angle_other_deg 0.844 r_mcbond_other 0.651 r_symmetry_vdw_refined 0.247 r_symmetry_vdw_other 0.238 r_nbd_refined 0.215 r_nbd_other 0.173 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.087 r_nbtor_other 0.081 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1178 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing