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Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 Peg 3350, 0.2 Mgcl2, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 40.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.59 α = 90 b = 53.076 β = 95.66 c = 112.652 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-1 mirrors 2005-06-29 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.6 0.12 45439 45258 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.09 99.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.015 50 45258 42972 2286 98.71 0.1667 0.16845 0.16661 0.1703 0.20274 0.1996 RANDOM 22.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.07 0.11 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_4_deg 18.393 r_dihedral_angle_3_deg 14.23 r_dihedral_angle_1_deg 6.302 r_scangle_it 1.784 r_scbond_it 1.206 r_angle_refined_deg 1.158 r_mcangle_it 0.71 r_mcbond_it 0.487 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_4_deg 18.393 r_dihedral_angle_3_deg 14.23 r_dihedral_angle_1_deg 6.302 r_scangle_it 1.784 r_scbond_it 1.206 r_angle_refined_deg 1.158 r_mcangle_it 0.71 r_mcbond_it 0.487 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.215 r_nbd_refined 0.184 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5378 Nucleic Acid Atoms Solvent Atoms 555 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SHELXCD phasing SHELXD phasing SOLVE phasing RESOLVE phasing