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Crystal structure of the oxidized gamma-subunit of the dissimilatory sulfite reductase (DsrC) from Archaeoglobus fulgidus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SAU PDB ENTRY 1SAU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 5000, Mes/KOH, (NH4)2 SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.22 α = 90 b = 64.8 β = 90 c = 129.712 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirror 2003-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 97.3 0.066 17 5 24295 24295
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 82.4 0.38 3 4.7 2005
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SAU 2.1 28.99 23085 23085 1165 97.08 0.2036 0.20363 0.20223 0.2017 0.23062 0.209 RANDOM 37.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 1.53 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.267 r_dihedral_angle_3_deg 16.11 r_dihedral_angle_4_deg 15.966 r_dihedral_angle_1_deg 5.52 r_scangle_it 2.833 r_scbond_it 1.787 r_angle_refined_deg 1.313 r_mcangle_it 1.114 r_mcbond_it 0.735 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.267 r_dihedral_angle_3_deg 16.11 r_dihedral_angle_4_deg 15.966 r_dihedral_angle_1_deg 5.52 r_scangle_it 2.833 r_scbond_it 1.787 r_angle_refined_deg 1.313 r_mcangle_it 1.114 r_mcbond_it 0.735 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2823 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing