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3-Oxoacyl-[acyl carrier protein] reductase from Thermus thermophilus TT0137
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ULS PDB Entry 1uls
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 5.5 291 0.1M citrate, 30v/v% 1,4-butanediol, pH 5.5, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.8 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.013 α = 90 b = 91.565 β = 104.24 c = 54.847 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 53.19 118284
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1uls 2.301 46.078 22665 713 96.624 0.216 0.2145 0.2478 0.2558 THIN SHELLS 21.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.004 -0.003 0.048 -0.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.196 r_dihedral_angle_4_deg 18.287 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_1_deg 4.936 r_scangle_it 3.099 r_mcangle_it 2.938 r_scbond_it 2.108 r_mcbond_it 1.93 r_angle_refined_deg 1.434 r_nbtor_refined 0.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.196 r_dihedral_angle_4_deg 18.287 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_1_deg 4.936 r_scangle_it 3.099 r_mcangle_it 2.938 r_scbond_it 2.108 r_mcbond_it 1.93 r_angle_refined_deg 1.434 r_nbtor_refined 0.282 r_nbd_refined 0.185 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.129 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3115 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 28
Software Software Software Name Purpose 3DSCALE data processing EPMR phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction LSCALE data scaling ARP/wARP model building MolProbity model building