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Ternary complex of the WH2 domain of WASP with Actin-DNAse I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ATN PDB ENTRY 1atn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 sodium formate, PEG2000 MME, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.27 α = 90 b = 41.798 β = 108.68 c = 119.418 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.078 40.1 99.7 0.079 20.2 6.9 43853 42018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.078 2.14 97.3 0.379 3.4 4.4 4189
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1atn 2.078 40.1 2 43853 37834 4184 95.8 0.15907 0.15335 0.1613 0.2103 0.1542 RANDOM 33.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 2.28 1.13 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.022 r_dihedral_angle_4_deg 22.5 r_dihedral_angle_3_deg 16.455 r_dihedral_angle_1_deg 6.134 r_scangle_it 4.329 r_scbond_it 2.982 r_angle_refined_deg 1.847 r_mcangle_it 1.653 r_mcbond_it 1.12 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.022 r_dihedral_angle_4_deg 22.5 r_dihedral_angle_3_deg 16.455 r_dihedral_angle_1_deg 6.134 r_scangle_it 4.329 r_scbond_it 2.982 r_angle_refined_deg 1.847 r_mcangle_it 1.653 r_mcbond_it 1.12 r_nbtor_refined 0.313 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_refined 0.165 r_chiral_restr 0.133 r_metal_ion_refined 0.073 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5003 Nucleic Acid Atoms Solvent Atoms 395 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing