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CRYSTAL STRUCTURE OF a putativeTenA family transcriptional regulator (BT_3146) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.88 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5 273 1.0M LiCl, 10.0% PEG-6000, 0.1M Citrate pH 5.0 VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 3.77 67.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 283.292 α = 90 b = 283.292 β = 90 c = 283.292 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror, double crystal monochromator, toroid 2005-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 164.4 91.5 0.086 13.74 74704 70979
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.95 60.8 0.819 2.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.88 164.4 74704 70979 3725 94.58 0.143 0.142 0.1543 0.165 0.1756 RANDOM 26.381
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.99 r_dihedral_angle_4_deg 15.828 r_dihedral_angle_3_deg 11.92 r_scangle_it 6.29 r_dihedral_angle_1_deg 4.834 r_scbond_it 4.676 r_mcangle_it 2.839 r_mcbond_it 1.836 r_angle_refined_deg 1.318 r_angle_other_deg 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.99 r_dihedral_angle_4_deg 15.828 r_dihedral_angle_3_deg 11.92 r_scangle_it 6.29 r_dihedral_angle_1_deg 4.834 r_scbond_it 4.676 r_mcangle_it 2.839 r_mcbond_it 1.836 r_angle_refined_deg 1.318 r_angle_other_deg 0.84 r_mcbond_other 0.56 r_symmetry_vdw_other 0.244 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.195 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.191 r_nbd_other 0.181 r_nbtor_other 0.086 r_symmetry_vdw_refined 0.082 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3702 Nucleic Acid Atoms Solvent Atoms 610 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing