2A05
The cysteine-rich secretory protein domain of Tpx-1 is related to ion channel toxins and regulates Ryanodine receptor Ca2+ signaling
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1mM TpX-1 U-15N 90% H2O 10% D2O | 1mM | 5.8 | ambient | 298 | ||
2 | 3D_15N-separated TOCSY | 1mM TpX-1 U-15N 90% H2O 10% D2O | 1mM | 5.8 | ambient | 298 | ||
3 | 2D NOESY | 1mM TpX-1 90% H2O 10% D2O | 1mM | 5.8 | ambient | 298 | ||
4 | 2D TOCSY | 1mM TpX-1 100% D2O | 1mM | 5.8 | ambient | 298 | ||
5 | DQF-COSY | 1mM TpX-1 100% D2O | 1mM | 5.8 | ambient | 298 | ||
6 | 2D NOESY | 1mM TpX-1 100% D2O | 1mM | 5.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 500 |
3 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
Automated Resonance assignment using Torsion Angle Dynamics (CANDID), Further refinement with CA and CB chem shifts and database potentials | NOES: 187 intra 251 short 253 med 188 long. 78 Chem shifts | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | violations <0.2A NOE, total energy |
Conformers Calculated Total Number | 49 |
Conformers Submitted Total Number | 23 |
Representative Model | 1 (lowest target function) |
Additional NMR Experimental Information | |
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Details | Standard 2D/3D methods |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 1 | Bruker |
2 | processing | XwinNMR | 1 | Bruker |
3 | data analysis | Sparky | 3.101 | Goddard Keller |
4 | refinement | CYANA | 1.06 | Guntert |
5 | refinement | XPLOR-NIH | 2.9.9 | Clore Schwieters Kuszewski Tjandra |