☰ Navigation Tabs
KAT8 MUTANT (KAT6A SURROGATE, MYST-CRYST) IN COMPLEX WITH KAT6A INHIBITOR COMPOUND 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG, HEPES
Crystal Properties Matthews coefficient Solvent content 2.47 50.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.269 α = 90 b = 57.355 β = 90 c = 121.139 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 46.27 99.9 0.057 0.062 0.999 15.7 6.5 64350 25.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 99.8 1.246 1.355 0.637 1.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 41.646 64349 2100 99.907 0.131 0.1292 0.1519 0.1781 0.1878 29.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.546 -1.309 -0.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.483 r_dihedral_angle_4_deg 16.511 r_dihedral_angle_3_deg 14.505 r_rigid_bond_restr 14.481 r_mcangle_other 13.807 r_mcangle_it 13.608 r_mcbond_it 13.2 r_lrange_other 12.422 r_lrange_it 12.399 r_scangle_it 11.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.483 r_dihedral_angle_4_deg 16.511 r_dihedral_angle_3_deg 14.505 r_rigid_bond_restr 14.481 r_mcangle_other 13.807 r_mcangle_it 13.608 r_mcbond_it 13.2 r_lrange_other 12.422 r_lrange_it 12.399 r_scangle_it 11.96 r_scangle_other 11.957 r_mcbond_other 11.758 r_scbond_it 10.866 r_scbond_other 10.862 r_dihedral_angle_1_deg 7.195 r_angle_refined_deg 1.999 r_angle_other_deg 1.489 r_xyhbond_nbd_other 0.361 r_symmetry_xyhbond_nbd_refined 0.273 r_symmetry_xyhbond_nbd_other 0.267 r_nbd_refined 0.262 r_nbd_other 0.237 r_xyhbond_nbd_refined 0.231 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.184 r_symmetry_nbd_refined 0.136 r_chiral_restr 0.128 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2253 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing