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KAT6A SURFACE MUTANT IN COMPLEX WITH INHIBITOR WM-8014
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 3350, sodium acetate, HEPES; glycerol as cryo protectant
Crystal Properties Matthews coefficient Solvent content 1.97 37.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.212 α = 94.073 b = 57.62 β = 90.339 c = 62.541 γ = 103.22
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 43.27 93.5 0.133 0.156 0.993 7.5 3.6 11480 59.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.78 2.95 90 1.093 1.283 0.651 0.99 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.784 43.27 11476 574 93.453 0.28 0.2778 0.2779 0.3286 0.3284 70.431
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.461 -2.48 -1.046 1.435 -1.12 2.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.443 r_dihedral_angle_3_deg 15.58 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 4.927 r_lrange_it 2.888 r_lrange_other 2.877 r_angle_refined_deg 1.149 r_angle_other_deg 0.967 r_mcangle_it 0.69 r_mcangle_other 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.443 r_dihedral_angle_3_deg 15.58 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 4.927 r_lrange_it 2.888 r_lrange_other 2.877 r_angle_refined_deg 1.149 r_angle_other_deg 0.967 r_mcangle_it 0.69 r_mcangle_other 0.69 r_scangle_it 0.61 r_scangle_other 0.61 r_mcbond_it 0.373 r_mcbond_other 0.373 r_scbond_it 0.346 r_scbond_other 0.346 r_symmetry_xyhbond_nbd_refined 0.168 r_nbtor_refined 0.158 r_nbd_other 0.154 r_symmetry_nbd_other 0.151 r_nbd_refined 0.145 r_symmetry_nbd_refined 0.095 r_xyhbond_nbd_refined 0.094 r_ncsr_local_group_1 0.091 r_chiral_restr_other 0.072 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.034 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4412 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing