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KAT8 MUTANT (KAT6A SURROGATE, MYST-CRYST) IN COMPLEX WITH KAT6A INHIBITOR COMPOUND 38
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG, HEPES
Crystal Properties Matthews coefficient Solvent content 2.47 50.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.142 α = 90 b = 57.426 β = 90 c = 121.314 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 46.11 98.8 0.142 0.154 0.998 9.9 6.7 30369 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 97.4 1.529 1.658 0.529 1.2 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 43.13 28850 1519 98.81 0.17886 0.17666 0.1877 0.22095 0.2289 RANDOM 33.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -2.53 1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.318 r_dihedral_angle_4_deg 21.991 r_dihedral_angle_3_deg 14.395 r_long_range_B_refined 9.535 r_long_range_B_other 9.47 r_dihedral_angle_1_deg 7.399 r_scangle_other 6.749 r_scbond_it 5.717 r_scbond_other 5.715 r_mcangle_other 3.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.318 r_dihedral_angle_4_deg 21.991 r_dihedral_angle_3_deg 14.395 r_long_range_B_refined 9.535 r_long_range_B_other 9.47 r_dihedral_angle_1_deg 7.399 r_scangle_other 6.749 r_scbond_it 5.717 r_scbond_other 5.715 r_mcangle_other 3.534 r_mcangle_it 3.532 r_mcbond_it 2.376 r_mcbond_other 2.351 r_angle_refined_deg 1.953 r_angle_other_deg 1.436 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2201 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction pointless data scaling PHASER phasing