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Inhibitor of GTP-Bound KRASG12C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 35% PEG 3350
0.1M pH=5.5 Na acetate/acetic acid
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.793 α = 90 b = 41.89 β = 99.06 c = 75.039 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2021-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 74.1 79.2 0.057 10.1 2.68 25771
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.065 40.7 0.629
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.95 74.1 17640 891 79.17 0.24272 0.23971 0.2461 0.29726 0.2993 RANDOM 35.221
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.28 -0.45 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.187 r_dihedral_angle_4_deg 21.222 r_dihedral_angle_3_deg 17.858 r_dihedral_angle_1_deg 16.002 r_long_range_B_refined 6.347 r_long_range_B_other 6.273 r_scbond_it 2.267 r_scbond_other 2.252 r_angle_refined_deg 1.481 r_mcbond_it 1.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.187 r_dihedral_angle_4_deg 21.222 r_dihedral_angle_3_deg 17.858 r_dihedral_angle_1_deg 16.002 r_long_range_B_refined 6.347 r_long_range_B_other 6.273 r_scbond_it 2.267 r_scbond_other 2.252 r_angle_refined_deg 1.481 r_mcbond_it 1.229 r_mcbond_other 1.229 r_angle_other_deg 0.513 r_chiral_restr 0.064 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2512 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 170
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing