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CATALYTIC ANTIBODY 5C8, FAB-HAPTEN COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other partially refined structure of the unliganded Fab 5C8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112 α = 90 b = 80 β = 118 c = 64.9 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 97 IMAGE PLATE MARRESEARCH PT COATED FUSED SILICA MIRROR 1996-12-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 96.7 0.057 16.9 7 33080 -3 29.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 93.4 0.304 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FREE FAB 5C8 2 25 33080 2505 96.7 0.229 0.229 0.2195 0.292 0.2719 RANDOM 39.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.72 5.84 7.7 10.93
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 30 x_scangle_it 4.69 x_mcangle_it 4.05 x_scbond_it 3.29 x_mcbond_it 2.53 x_angle_deg 1.4 x_improper_angle_d 0.7 x_bond_d 0.007 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 30 x_scangle_it 4.69 x_mcangle_it 4.05 x_scbond_it 3.29 x_mcbond_it 2.53 x_angle_deg 1.4 x_improper_angle_d 0.7 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3251 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing X-PLOR refinement