X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 8ADH 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS8.427850 mM Tris-HCl, 25% methylpentanediol, pH 8.4, MICRODIALYSIS, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
2.3647.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.78α = 90
b = 74.29β = 90
c = 181.25γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-07-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5920.271.90.07511.55.66367321125.468
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.591.65580.2114.75.742918

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT8ADH1.5920.2135539114371.920.20110.20110.199460.25593RANDOM35.47
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.861.46-2.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.304
r_dihedral_angle_4_deg20.041
r_sphericity_free17.858
r_dihedral_angle_3_deg14.379
r_sphericity_bonded8.267
r_dihedral_angle_1_deg5.908
r_scangle_it4.532
r_scbond_it3.249
r_mcangle_it2.218
r_rigid_bond_restr1.671
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.304
r_dihedral_angle_4_deg20.041
r_sphericity_free17.858
r_dihedral_angle_3_deg14.379
r_sphericity_bonded8.267
r_dihedral_angle_1_deg5.908
r_scangle_it4.532
r_scbond_it3.249
r_mcangle_it2.218
r_rigid_bond_restr1.671
r_angle_refined_deg1.529
r_mcbond_it1.493
r_nbtor_refined0.308
r_nbd_refined0.207
r_symmetry_vdw_refined0.153
r_xyhbond_nbd_refined0.144
r_chiral_restr0.103
r_symmetry_hbond_refined0.1
r_bond_refined_d0.014
r_metal_ion_refined0.011
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2785
Nucleic Acid Atoms
Solvent Atoms200
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling