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Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 290 15% PEG400, 0.1M NaAc, pH 4.5, VAPOR DIFFUSION, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.7 α = 90 b = 140 β = 118.4 c = 153 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9756 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 10 0.183 0.175 10 10 209310 198822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 95.2 0.635 0.589 3.3 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 10 198822 10461 99.43 0.20282 0.20055 0.2125 0.24595 0.253 RANDOM 44.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.09 1.35 2.77 2.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.786 r_dihedral_angle_4_deg 23.67 r_dihedral_angle_3_deg 17.467 r_dihedral_angle_1_deg 6.157 r_scangle_it 3.68 r_scbond_it 2.255 r_angle_refined_deg 1.91 r_mcangle_it 1.257 r_angle_other_deg 1.005 r_mcbond_it 0.717
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.786 r_dihedral_angle_4_deg 23.67 r_dihedral_angle_3_deg 17.467 r_dihedral_angle_1_deg 6.157 r_scangle_it 3.68 r_scbond_it 2.255 r_angle_refined_deg 1.91 r_mcangle_it 1.257 r_angle_other_deg 1.005 r_mcbond_it 0.717 r_symmetry_vdw_other 0.264 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.237 r_symmetry_hbond_refined 0.223 r_mcbond_other 0.214 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.175 r_nbd_other 0.171 r_metal_ion_refined 0.148 r_chiral_restr 0.112 r_nbtor_other 0.091 r_bond_refined_d 0.021 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27104 Nucleic Acid Atoms Solvent Atoms 513 Heterogen Atoms 484
Software Software Software Name Purpose REFMAC refinement XDS data scaling PHASER phasing