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Structural Analysis of Leishmania braziliensis eukaryotic initiation factor 5a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 277 PEG 400, Potassium thiocyanate, Sodium Citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.9 56.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.991 α = 90 b = 64.991 β = 90 c = 88.297 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-06-12 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 315 2004-06-13 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-1 0.9791,0.8434,0.9793 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 44 99 0.048 12.2 3.1 28757 -3 19.523
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.69 99.9 0.386 2.7 3.2 4184
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 10 27121 1460 98.91 0.1765 0.1765 0.17444 0.1764 0.21398 0.2161 RANDOM 35.824
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.08 -0.15 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.154 r_dihedral_angle_3_deg 11.509 r_dihedral_angle_4_deg 11.228 r_scangle_it 6.683 r_dihedral_angle_1_deg 6.127 r_scbond_it 4.482 r_mcangle_it 3.564 r_mcbond_it 2.481 r_angle_refined_deg 1.624 r_symmetry_hbond_refined 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.154 r_dihedral_angle_3_deg 11.509 r_dihedral_angle_4_deg 11.228 r_scangle_it 6.683 r_dihedral_angle_1_deg 6.127 r_scbond_it 4.482 r_mcangle_it 3.564 r_mcbond_it 2.481 r_angle_refined_deg 1.624 r_symmetry_hbond_refined 0.235 r_symmetry_vdw_refined 0.215 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.131 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1070 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing