☰ Navigation Tabs
staphylococcal superantigen-like protein 7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M4V PDB ENTRY 1M4V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 28% PEG-MME 2K, 0.2 M AMMONIUM SULPHATE, 0.1 M MES, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.6 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.66 α = 90 b = 81.66 β = 90 c = 148.04 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2 MIRRORS 1999-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 45.5 98.7 0.091 14.5 4.5 59998 73.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 99.2 0.46 3.1 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1M4V 2.75 39.36 13374 663 97.9 0.213 0.213 0.2303 0.259 0.2627 RANDOM 45.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.64 -5.64 11.27
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.9 c_scangle_it 6.44 c_scbond_it 4.78 c_mcangle_it 4.43 c_mcbond_it 3.05 c_angle_deg 1.3 c_improper_angle_d 0.67 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.9 c_scangle_it 6.44 c_scbond_it 4.78 c_mcangle_it 4.43 c_mcbond_it 3.05 c_angle_deg 1.3 c_improper_angle_d 0.67 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3142 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling MOLREP phasing