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Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to AMPPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TQI pdb entry 1tqi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.83 293 PEG 900, SODIUM PHOSPHATE, SODIUM CITRATE, pH 3.83, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 51.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.165 α = 90 b = 44.259 β = 94.38 c = 62.097 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.99998 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 29 0.042 40.9 7.5 21420 20313
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 95.7 0.125 12.1 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1tqi 1.99 28.99 21420 20313 1106 97.9 0.17435 0.17134 0.178 0.22775 0.2262 RANDOM 23.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.04 -0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.287 r_scangle_it 6.552 r_scbond_it 4.032 r_mcangle_it 2.637 r_angle_refined_deg 2.067 r_mcbond_it 1.466 r_angle_other_deg 1.023 r_symmetry_hbond_refined 0.282 r_symmetry_vdw_other 0.27 r_nbd_other 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.287 r_scangle_it 6.552 r_scbond_it 4.032 r_mcangle_it 2.637 r_angle_refined_deg 2.067 r_mcbond_it 1.466 r_angle_other_deg 1.023 r_symmetry_hbond_refined 0.282 r_symmetry_vdw_other 0.27 r_nbd_other 0.255 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.205 r_chiral_restr 0.158 r_nbtor_other 0.092 r_bond_refined_d 0.028 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2185 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing