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Structural basis of dynamic glycine receptor clustering
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Unbound gephyrin (not published)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 Li2SO4, pH 6., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.9 74.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.547 α = 90 b = 161.547 β = 90 c = 126.252 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 50 97.7 0.108 7.8 27162
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.33 97.8 0.494 1.6 11074
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Unbound gephyrin (not published) 3.25 50 28617 27162 1446 97.71 0.2458 0.2458 0.24285 0.22 0.30306 0.2767 RANDOM 45.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.82 3.41 6.82 -10.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.023 r_scangle_it 2.104 r_mcangle_it 1.507 r_angle_refined_deg 1.237 r_scbond_it 1.108 r_mcbond_it 0.83 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.213 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.023 r_scangle_it 2.104 r_mcangle_it 1.507 r_angle_refined_deg 1.237 r_scbond_it 1.108 r_mcbond_it 0.83 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.213 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_symmetry_hbond_refined 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6203 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 40
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling