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Mycobacterium tuberculosis Chaperonin60.2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KP8 1KP8.pdb
Crystallization Crystal Properties Matthews coefficient Solvent content 2.87 56.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.674 α = 90 b = 113.825 β = 94.585 c = 79.535 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 99.5 0.1 20.2 4.99 17915 17489 88.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 97 0.415 2.6 3 1705
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KP8.pdb 3.2 50 17205 16335 870 99.56 0.2436 0.24359 0.24142 0.2204 0.2849 0.2625 RANDOM 82.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.92 -1.73 -0.98 2.62
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 12.4 r_mcangle_it 9.475 r_scbond_it 8.755 r_mcbond_it 5.937 r_dihedral_angle_1_deg 3.017 r_angle_refined_deg 1.003 r_nbd_refined 0.261 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.116
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 12.4 r_mcangle_it 9.475 r_scbond_it 8.755 r_mcbond_it 5.937 r_dihedral_angle_1_deg 3.017 r_angle_refined_deg 1.003 r_nbd_refined 0.261 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.057 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6595 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing