1R4H
NMR Solution structure of the IIIc domain of GB Virus B IRES Element
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 10 mM phosphate, 10 mM KCL, 0.05 mM EDTA pH 6.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10 mM KCl | 6.8 | ambient | 298 | |
2 | 2D TOCSY | 10 mM phosphate, 10 mM KCL, 0.05 mM EDTA pH 6.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10 mM KCl | 6.8 | ambient | 298 | |
3 | DQF-COSY | 10 mM phosphate, 10 mM KCL, 0.05 mM EDTA pH 6.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10 mM KCl | 6.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 750 |
2 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing restrained molecular dynamics complete relaxation matrix | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with acceptable covalent geometry,structures with favorable non-bond energy |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.1 | BRUNGER, A |
2 | data analysis | Felix | 97 | BIOSYM |