1QNQ

The 3-D structure of a Trichoderma reesei b-mannanase from glycoside hydrolase family 5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.52M AMMONIUM SULPHATE, 0.1M TRIS-HCL PH 8.5
Crystal Properties
Matthews coefficientSolvent content
238

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.13α = 90
b = 54.29β = 110.21
c = 61.05γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC CCDMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6520910.03918.426081010.334
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7173.40.0719.81.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.652060810910.1150.16RANDOM10.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.126-1.465-0.0772.053
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_special_tor15
p_staggered_tor11.4
p_planar_tor4.5
p_scangle_it2.503
p_mcangle_it2.077
p_scbond_it1.867
p_mcbond_it1.645
p_multtor_nbd0.249
p_singtor_nbd0.158
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_special_tor15
p_staggered_tor11.4
p_planar_tor4.5
p_scangle_it2.503
p_mcangle_it2.077
p_scbond_it1.867
p_mcbond_it1.645
p_multtor_nbd0.249
p_singtor_nbd0.158
p_chiral_restr0.11
p_planar_d0.04
p_angle_d0.035
p_plane_restr0.0236
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2669
Nucleic Acid Atoms
Solvent Atoms654
Heterogen Atoms104

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
ARP/wARPphasing