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The 3-D structure of a Trichoderma reesei b-mannanase from glycoside hydrolase family 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 2M AMMONIUM SULPHATE, 0.1M TRIS-HCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 2 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.13 α = 90 b = 54.29 β = 110.21 c = 61.05 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 91 0.039 18.4 2 60810 10.334
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 73.4 0.071 9.8 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.65 20 60810 91 0.115 0.16 RANDOM 10.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.126 -1.465 -0.077 2.053
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.8 p_special_tor 15 p_staggered_tor 11.4 p_planar_tor 4.5 p_scangle_it 2.503 p_mcangle_it 2.077 p_scbond_it 1.867 p_mcbond_it 1.645 p_multtor_nbd 0.249 p_singtor_nbd 0.158
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.8 p_special_tor 15 p_staggered_tor 11.4 p_planar_tor 4.5 p_scangle_it 2.503 p_mcangle_it 2.077 p_scbond_it 1.867 p_mcbond_it 1.645 p_multtor_nbd 0.249 p_singtor_nbd 0.158 p_chiral_restr 0.11 p_planar_d 0.04 p_angle_d 0.035 p_plane_restr 0.0236 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2669 Nucleic Acid Atoms Solvent Atoms 654 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling ARP/wARP phasing