1P6U
NMR structure of the BeF3-activated structure of the response regulator Chey2-Mg2+ from Sinorhizobium meliloti
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
2 | 3D_13C-separated_NOESY | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
3 | 3D_15N-separated_NOESY | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
7 | HNCA | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
8 | HNCO | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
9 | HN(CO)CA | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
10 | CBCA(CO)CA | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
11 | HBHA(CO)NH | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
12 | HCCH-TOCSY | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 | ||
13 | CC(CO)NH | 1mM CheY2, 1MM TRIS-HCL, 5MM MGCL2, 5MM BECL2, 50MM NAF | 5mM MgCl2, 20mM Tris/HCl | 6.83 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 250 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | TOTAL NUMBER OF NOES USED FOR THE CALCULATION: 1595, NUMBER OF INTRA-RESIDUE NOES USED FOR THE CALCULATION: 815, NUMBER OF SEQUENTIAL NOES USED FOR THE CALCULATION: 406, NUMBER OF MEDIUM RANGE NOES USED FOR THE CALCULATION: 155, NUMBER OF LONG RANGE (I,J, J > I+4) NOES USED FOR THE CALCULATION: 219, NUMBER OF DIHEDRAL ANGLES RESTRAINTS USED FOR THE CALCULATION: 58, NUMBER OF HYDROGEN BOND RESTRAINTS USED FOR THE CALCULATION: 7, MINIMAL TARGET FUNCTION WAS 1.92, MEAN TARGET FUNCTION OF 16 STRUCTURES WAS 1.95 (+-0.2), THE NUMBER OF NOE VIOLATIONS > 0.02 NM WAS 5 (+-2), THE NUMBER OF NOE VIOLATIONS > 0.03 NM WAS 0, THE NUMBER OF DIHEDRAL ANGLES VIOLATIONS > 10 DEGREES WAS 0, RMSDS BACK BONE (6-124): 0.027 (+-0.007) NM, RMSDS ALL HEAVY ATOMS (6-124): 0.083 (+-0.013)NM |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.5 | Bruker |
2 | data analysis | AURELIA | 2.7.9 | Bruker |
3 | structure solution | DIANA | 1.5 | Guentert |
4 | refinement | DIANA | 1.5 | Guentert |