☰ Navigation Tabs
Complex between BAFF and a BR3 derived peptide presented in a beta-hairpin scaffold
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KXG 1KXG with the waters removed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 292 20% PEG 3350, 1.0 M LiCl, 0.1M sodium cacodylate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.18 61.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.633 α = 90 b = 121.633 β = 90 c = 157.214 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2002-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.6 0.081 10.5 3.5 26356 26356 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 98.8 0.41 2.5 3.5 2630
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KXG with the waters removed 3 30 -3 23768 2536 99.57 0.21992 0.21288 0.1926 0.28633 0.2509 random 31.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.1 0.19 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.766 r_scangle_it 1.722 r_mcangle_it 1.678 r_angle_refined_deg 1.357 r_scbond_it 1.042 r_mcbond_it 0.931 r_angle_other_deg 0.775 r_symmetry_vdw_other 0.261 r_nbd_other 0.234 r_nbd_refined 0.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.766 r_scangle_it 1.722 r_mcangle_it 1.678 r_angle_refined_deg 1.357 r_scbond_it 1.042 r_mcbond_it 0.931 r_angle_other_deg 0.775 r_symmetry_vdw_other 0.261 r_nbd_other 0.234 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.109 r_nbtor_other 0.088 r_chiral_restr 0.077 r_symmetry_hbond_refined 0.023 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7507 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing