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OXYDIZED NITRITE REDUCTASE FROM PSEUDOMONAS AERUGINOSA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unpublished NITRITE REDUCTASE FROM THIOSPHAERA PANTOTROPHA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.4 PROTEIN WAS CRYSTALLIZED FROM @M NA/K2 PHOSPHATE, 50MM TRIS-HCL, PH 8.4
Crystal Properties Matthews coefficient Solvent content 3.44 64.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.068 α = 90 b = 90.072 β = 90 c = 111.888 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 X RAY IMAGE INTENSIFIER (THOMPSON) +PRINCETON CCD DETECTOR THOMPSON FOCUSED BEAM TOROIDAL MIRROR 1997-01-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID09 ESRF ID09
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 30 99.3 0.063 0.063 7.7 3.8 91663 2 36.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.27 96.9 0.214 0.214 3.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 30 2.5 82362 2937 89 0.209 0.209 0.3178 0.242 0.3271 RANDOM 39.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.2 3.416 3.18
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.59 x_scbond_it 3.2 x_mcbond_it 2 x_angle_deg 1.857 x_improper_angle_d 1.342 x_bond_d 0.014 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.59 x_scbond_it 3.2 x_mcbond_it 2 x_angle_deg 1.857 x_improper_angle_d 1.342 x_bond_d 0.014 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcangle_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8415 Nucleic Acid Atoms Solvent Atoms 870 Heterogen Atoms 198
Software Software Software Name Purpose AMoRE phasing X-PLOR refinement DENZO data reduction PROW data reduction CCP4 data scaling