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NITROREDUCTASE FROM ENTEROBACTER CLOACAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NOX PDB ENTRY 1NOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.17 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44 α = 90 b = 92.5 β = 93 c = 102.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR XUONG-HAMLIN MULTIWIRE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 95 0.062 0.062 2 52520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NOX 1.95 20 44552 2359 95 0.17 0.18 0.172 0.24 0.2247 RANDOM 26.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 18.8 p_staggered_tor 15.9 p_planar_tor 4.7 p_scangle_it 3.083 p_mcangle_it 2.401 p_scbond_it 2.002 p_mcbond_it 1.625 p_singtor_nbd 0.279 p_multtor_nbd 0.228 p_xyhbond_nbd 0.145
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 18.8 p_staggered_tor 15.9 p_planar_tor 4.7 p_scangle_it 3.083 p_mcangle_it 2.401 p_scbond_it 2.002 p_mcbond_it 1.625 p_singtor_nbd 0.279 p_multtor_nbd 0.228 p_xyhbond_nbd 0.145 p_chiral_restr 0.141 p_angle_d 0.04 p_planar_d 0.038 p_plane_restr 0.028 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6708 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 124
Software Software Software Name Purpose AMoRE phasing REFMAC refinement UCSD-system data reduction UCSD-system data scaling