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Chemosensory Protein in Complex with bromo-dodecanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N8V CSP complexed with bromo-dodecanol, form P 2<1>
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 34% PEG 2000, 0.1M Na-cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.83 32.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.529 α = 90 b = 54.579 β = 116.59 c = 33.226 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 81.3 0.031 11.8 1.6 7693 7693 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 71 0.087 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CSP complexed with bromo-dodecanol, form P 2<1> 1.8 38.63 1 7693 6730 683 80.74 0.19033 0.19033 0.18379 0.2847 0.24571 0.3156 RANDOM 18.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -1.21 0.9 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.884 r_scangle_it 4.504 r_dihedral_angle_1_deg 3.962 r_scbond_it 2.953 r_angle_refined_deg 1.479 r_mcangle_it 1.429 r_angle_other_deg 0.794 r_mcbond_it 0.745 r_symmetry_hbond_refined 0.741 r_xyhbond_nbd_refined 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.884 r_scangle_it 4.504 r_dihedral_angle_1_deg 3.962 r_scbond_it 2.953 r_angle_refined_deg 1.479 r_mcangle_it 1.429 r_angle_other_deg 0.794 r_mcbond_it 0.745 r_symmetry_hbond_refined 0.741 r_xyhbond_nbd_refined 0.266 r_symmetry_vdw_other 0.264 r_nbd_refined 0.239 r_nbd_other 0.207 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_other 0.138 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 820 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 42
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling