1N5O

Structural consequences of a cancer-causing BRCA1-BRCT missense mutation


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1JNXpdb entry 1jnx

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.7293ammonium sulphate, cobalt chloride, MES, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
4.6873.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.535α = 90
b = 114.535β = 90
c = 121.527γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-22001-12-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID1.0093APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85012024

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1jnx2.820120351114182599.430.275380.275380.273640.29777RANDOM30.131
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.632.324.63-6.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg20.367
r_dihedral_angle_1_deg4.256
r_scangle_it1.967
r_angle_refined_deg1.857
r_scbond_it1.115
r_mcangle_it0.875
r_symmetry_hbond_refined0.476
r_mcbond_it0.459
r_symmetry_vdw_refined0.23
r_nbd_refined0.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg20.367
r_dihedral_angle_1_deg4.256
r_scangle_it1.967
r_angle_refined_deg1.857
r_scbond_it1.115
r_mcangle_it0.875
r_symmetry_hbond_refined0.476
r_mcbond_it0.459
r_symmetry_vdw_refined0.23
r_nbd_refined0.191
r_xyhbond_nbd_refined0.184
r_chiral_restr0.131
r_bond_refined_d0.013
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1548
Nucleic Acid Atoms
Solvent Atoms59
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
CNSphasing