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Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R,R)-5,11-cis-diethyl-5,6,11,12-tetrahydrochrysene-2,8-diol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A52 PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT experimental model PDB 1ERE PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT experimental model PDB 1ERR PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT experimental model PDB 3ERD PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT experimental model PDB 3ERT PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 295 1.5-1.75 M Ammonium sulfate, 100 mM Sodium Acetate pH 4.8-5.2 294-296 K, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.99 67.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.144 α = 90 b = 99.144 β = 90 c = 193.383 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 4 1999-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.07 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 49.6 99.7 0.045 23.3 4.3 14895 14895 -3 46.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.06 100 0.302 3.4 1507
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1A52, 1ERE, 1ERR, 3ERD, 3ERT 2.95 49.6 14893 14893 741 99.6 0.259 0.2572 0.299 0.2929 Random 40.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.434 5.662 12.434 -24.867
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 17.92 c_scangle_it 4.115 c_mcangle_it 3.071 c_scbond_it 2.672 c_mcbond_it 1.793 c_angle_deg 1.29 c_improper_angle_d 0.85 c_bond_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3402 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 48
Software Software Software Name Purpose AMoRE phasing CNS refinement DENZO data reduction SCALEPACK data scaling