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Crystal Structure of Phosphomannomutase/Phosphoglucomutase S108A mutant from P. aeruginosa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K35 Native protein, pdb entry 1k35
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 Na,K tartrate, MOPS, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.25 44.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.064 α = 90 b = 71.306 β = 90 c = 96.586 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic confocal M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 40 97.4 0.053 28.5 4.9 49105 49105 33.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 98.8 0.363 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION refinement of wild-type structure THROUGHOUT Native protein, pdb entry 1k35 1.75 40 46467 46467 2491 97.5 0.1697 0.1697 0.16846 0.19455 RANDOM 28.905
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.56 1.2
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 18.087 p_scangle_it 4.56 p_singtor_nbd 4.493 p_scbond_it 2.796 p_mcangle_it 1.629 p_angle_deg 1.59 p_mcbond_it 0.925 P_xyhbond_nbd 0.181 p_hb_or_metal_coord 0.145 p_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 18.087 p_scangle_it 4.56 p_singtor_nbd 4.493 p_scbond_it 2.796 p_mcangle_it 1.629 p_angle_deg 1.59 p_mcbond_it 0.925 P_xyhbond_nbd 0.181 p_hb_or_metal_coord 0.145 p_chiral_restr 0.104 p_bond_d 0.017 p_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3458 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling