☰ Navigation Tabs
Gamma-adaptin appendage domain from clathrin adaptor AP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 50MM HEPES PH7.4, 0.9M NA/K TARTRATE, 20% W/V GLYCEROL, pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.04 39.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.09 α = 90 b = 54.82 β = 90 c = 68.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1998-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 26 98.7 0.064 15 3.7 11924 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.91 92.2 0.242 5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.81 42.64 10724 1164 98.7 0.18 0.175 0.1898 0.223 0.2357 RANDOM 18.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.82 0.54
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.828 r_scbond_it 4.146 r_mcangle_it 2.75 r_angle_other_deg 2.203 r_mcbond_it 1.602 r_dihedral_angle_3_deg 1.05 r_symmetry_hbond_refined 0.327 r_xyhbond_nbd_refined 0.258 r_nbd_refined 0.242 r_nbd_other 0.232
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.828 r_scbond_it 4.146 r_mcangle_it 2.75 r_angle_other_deg 2.203 r_mcbond_it 1.602 r_dihedral_angle_3_deg 1.05 r_symmetry_hbond_refined 0.327 r_xyhbond_nbd_refined 0.258 r_nbd_refined 0.242 r_nbd_other 0.232 r_symmetry_vdw_other 0.211 r_symmetry_vdw_refined 0.168 r_chiral_restr 0.137 r_bond_refined_d 0.032 r_xyhbond_nbd_other 0.031 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 931 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing