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hexadecaheme high molecular weight cytochrome Hmc from Desulfovibrio vulgaris Hildenborough
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 30% JEFFAMINE M-600, MES PH 6.5, 50 MM CSCL
Crystal Properties Matthews coefficient Solvent content 2.727 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.386 α = 90 b = 108.386 β = 90 c = 102.809 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2001-05-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 27 97.3 0.071 7.3 5.2 23044
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 84.6 0.421 1.9 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 33.52 25316 1281 100 0.201 0.1987 0.276 0.2711 RANDOM 36.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.11 -1.55 -3.11 4.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.398 r_dihedral_angle_1_deg 5.322 r_scangle_it 4.914 r_scbond_it 3.493 r_angle_refined_deg 2.675 r_mcangle_it 2.251 r_mcbond_it 1.249 r_symmetry_hbond_refined 0.676 r_nbd_refined 0.4 r_xyhbond_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.398 r_dihedral_angle_1_deg 5.322 r_scangle_it 4.914 r_scbond_it 3.493 r_angle_refined_deg 2.675 r_mcangle_it 2.251 r_mcbond_it 1.249 r_symmetry_hbond_refined 0.676 r_nbd_refined 0.4 r_xyhbond_nbd_refined 0.22 r_chiral_restr 0.171 r_metal_ion_refined 0.155 r_bond_refined_d 0.028 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3793 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 688
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling SHARP phasing