☰ Navigation Tabs
EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 DQF-COSY 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA 10% D2O/ 90% H2O; 100% D2O 10 mM 6.3 1 atm 308 2 3D_15N-separated_NOESY 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA 10% D2O/ 90% H2O; 100% D2O 10 mM 6.3 1 atm 308 3 3D_13C-separated_NOESY 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA 10% D2O/ 90% H2O; 100% D2O 10 mM 6.3 1 atm 308 4 2D NOESY 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA 10% D2O/ 90% H2O; 100% D2O 10 mM 6.3 1 atm 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing molecular dynamics 605 NOEs, 122 dihedral constraints, and 36 hydrogen bonds VNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations,structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 29 Representative Model 11 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 6.1 2 processing VNMR 6.1 3 processing Felix 98 4 refinement X-PLOR 3.83 Brunger 5 structure solution X-PLOR 3.83 Brunger