1FYP
EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | DQF-COSY | 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA | 10% D2O/ 90% H2O; 100% D2O | 10 mM | 6.3 | 1 atm | 308 | |
2 | 3D_15N-separated_NOESY | 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA | 10% D2O/ 90% H2O; 100% D2O | 10 mM | 6.3 | 1 atm | 308 | |
3 | 3D_13C-separated_NOESY | 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA | 10% D2O/ 90% H2O; 100% D2O | 10 mM | 6.3 | 1 atm | 308 | |
4 | 2D NOESY | 3 mM RNA, 3 mM paromomycin, 10 mM Naphosphate, pH 6.3, 13C/15N RNA | 10% D2O/ 90% H2O; 100% D2O | 10 mM | 6.3 | 1 atm | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing molecular dynamics | 605 NOEs, 122 dihedral constraints, and 36 hydrogen bonds | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 29 |
Representative Model | 11 (n/a) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | |
2 | processing | VNMR | 6.1 | |
3 | processing | Felix | 98 | |
4 | refinement | X-PLOR | 3.83 | Brunger |
5 | structure solution | X-PLOR | 3.83 | Brunger |